Bioinformatics

FASTA

FASTA is an alignment program for bioinformatics.

fastGEAR

fastGEAR is software for analysing sequence alignments.

FastME

FastME provides distance algorithms to infer phylogenies.

fastq-join

Similar to audy's stitch program, but in C, more efficient and supports some automatic benchmarking and tuning. It uses the same squared distance for anchored alignment as other tools.

FastQC

FastQC is a Quality Control application for FastQ files.

fastStructure

fastStructure is an algorithm for inferring population structure from large SNP genotype data.

FastTree

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences.

FastX

The FastX-Toolkit includes FASTQ/A short-reads pre-processing tools.

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