Bioinformatics

EDTA

The EDTA package (Extensive de novo TE Annotator) was designed to filter out false discoveries in raw TE candidates and generate a high-quality non-redundant TE library for whole-genome TE annotations.

eggNOG-mapper

eggNOG-mapper is a tool for fast functional annotation of novel sequences.

Enveomics

Enveomics collection is a toolbox for microbial genomics and metagenomics.

EVidenceModeler

The EVidenceModeler (aka EVM) software combines ab intio gene predictions and protein and transcript alignments into weighted consensus gene structures.

EvidentialGene

EvidentialGene (also called evigene) is a genome informatics project for "Evidence Directed Gene Construction for Eukaryotes", for constructing high quality, accurate gene sets for animals and plants (any eukaryotes), being developed by Don Gilbert at Indiana University, gilbertd at indiana edu.

ExaBayes

ExaBayes is a software package for Bayesian tree inference.

Exonerate

Exonerate is a generic tool for pairwise sequence comparison.

FAMLI

Functional Analysis of Metagenomes by Likelihood Inference

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