Bioinformatics

ClonalFrameML

ClonalFrameML is a a software package that performs efficient inference of recombination in bacterial genomes.

Clustal Omega

Clustal Omega: the last alignment program you'll ever need.

CNVpytor

CNVpytor is a Python package and command line tool for CNV/CNA analysis from depth-of-coverage by mapped reads developed in Abyzov Lab, Mayo Clinic.

CoDan

CodAn (Coding sequence Annotator) is a computational tool designed to characterize the CDS and UTR regions on transcripts from any Eukaryote species.

CONCOCT

A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads.

Core-genome-alignment

Scripts to make a concatenated alignment of core genes from bacterial genomes and compare gene content.

Corona Lite

Corona Lite is a genome alignment tool.

Cufflinks

Cufflinks is a reference-guided assembler for RNA-Seq experiments. It simultaneously assembles transcripts from reads and estimates their relative abundances, without using a reference annotation.

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