Bioinformatics

DIAMOND

DIAMOND is a protein sequence aligner.

DLCpar

DLCpar is a reconciliation method for inferring gene duplications, losses, and coalescence (accounting for incomplete lineage sorting)

DSK

DSK is a k-mer counter for reads or genomes. The DSK software comes with the GATB module.

eggNOG-mapper

eggNOG-mapper is a tool for fast functional annotation of novel sequences.

Enveomics

Enveomics collection is a toolbox for microbial genomics and metagenomics.

EVidenceModeler

The EVidenceModeler (aka EVM) software combines ab intio gene predictions and protein and transcript alignments into weighted consensus gene structures.

EvidentialGene

EvidentialGene (also called evigene) is a genome informatics project for "Evidence Directed Gene Construction for Eukaryotes", for constructing high quality, accurate gene sets for animals and plants (any eukaryotes), being developed by Don Gilbert at Indiana University, gilbertd at indiana edu.

ExaBayes

ExaBayes is a software package for Bayesian tree inference.

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