Bioinformatics

Canu

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

CD-HIT

CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.

Celera Assembler

This software has multiple names; Celera Assembler, or wgs, which stands for Whole-Genome Shotgun Assembler

Cell Ranger DNA

The Chromium Single Cell CNV Solution provides a comprehensive, scalable approach to high resolution copy number profiling of hundreds to thousands of cells in a single sample.

Centroid Fold

CentroidFold predicts an RNA secondary structure from an RNA sequence.

Circlator

A tool to circularize genome assemblies.

ClonalFrameML

ClonalFrameML is a a software package that performs efficient inference of recombination in bacterial genomes.

Clustal Omega

Clustal Omega: the last alignment program you'll ever need.

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