Bioinformatics

Biopython

Biopython is a set of freely available tools for biological computation written in Python by an international team of developers.

Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states.

BLAST+

BLAST+ searches one or more nucleic acid or protein databases for BLAST+ sequences similar to one or more query sequences of any type. BLAST+ can produce gapped alignments for the matches it finds.

BLAT

BLAT (the BLAST-Like Alignment Tool) is a software program to identify similarities between DNA sequences and protein sequences.

Bowtie

Bowtie is an ultrafast, memory-efficient short read aligner.

Bowtie2

Bowtie2 is an ultrafast, memory-efficient short read aligner.

BUSCO

BUSCO provides quantitative measures for the assessment of genome assembly, gene set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB.

BWA

BWA (Burrows-Wheeler Aligner) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome.

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