Biopython is a set of freely available tools for biological computation written in Python by an international team of developers.
A tool to map bisulfite converted sequence reads and determine cytosine methylation states.
BLAST+ searches one or more nucleic acid or protein databases for BLAST+ sequences similar to one or more query sequences of any type. BLAST+ can produce gapped alignments for the matches it finds.
BLAT (the BLAST-Like Alignment Tool) is a software program to identify similarities between DNA sequences and protein sequences.
Bowtie is an ultrafast, memory-efficient short read aligner.
Bowtie2 is an ultrafast, memory-efficient short read aligner.
BUSCO provides quantitative measures for the assessment of genome assembly, gene set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB.
BWA (Burrows-Wheeler Aligner) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome.