Bioinformatics

ABySS

ABySS (Assembly By Short Sequences) is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.

AMOS

AMOS is a collection of tools and class interfaces for the assembly of DNA reads.

AnnoTALE

AnnoTALE is a suite of applications for identifying and analysing TALEs in Xanthomonas genomes, for clustering TALEs into classes by their RVD sequences, for assigning novel TALEs to existing classes, for proposing TALE names using a unified nomenclature, and for predicting targets of individual TALEs and TALE classes.

antiSMASH

antiSMASH is a gene cluster detector.

BamTools

BamTools are a C++ API & command-line toolkit for working with BAM data.

BBmap

BBmap is a program for Short read aligner for DNA and RNA-seq data.

Bcftools

Bcftools is a program for variant calling and manipulating VCFs and BCFs.

beagle-lib

beagle-lib is a library of GPU based functions for phylogenetic analysis.

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